Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186741750_186771582_R

Intron Information:

Intron Rank:

138125

Intron Class:

major

Intron Phase:

Intron Coordinates:

186741750 - 186771582

Intron Length:

29833

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAATTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCATTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAC

U12 Branch Point Sequence:

TCTTCTCCATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

81.5

32.9

Major BPS

63.9

0.35

1.3

64.5

42.5

Major PPT

78.7

0.64

0.8

73.5

30.2

Minor 5ss

-0.4

67.5

43.6

Minor BPS

46.2

-0.2

68.41

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029489

186728579 - 186772004

43426