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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18676763_18677536_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18676763 - 18677536
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTATACTTAACA
Flanking Amino Acid:
LVLFFDNKRSWQWLPKSKMV
Intron Amino Acid Position:
1107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75.9
34
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
85.1
0.79
0.7
79.2
26.5
Minor 5ss
49.1
-0.1
2.4
64.8
41.7
Minor BPS
72.7
0.71
1.5
77.47
39

Associated Gene:

Gene:
BRD1
Ensembl Gene ID:
ENSAPLG00000015650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016336
18676579 - 18730407
53829