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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18677692_18679123_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18677692 - 18679123
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCTCTTTTATA
Flanking Amino Acid:
CSGYPSYPALIIDPKMPRVA
Intron Amino Acid Position:
1056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.4
0.84
0.6
83.7
24.7
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
65.9
0.5
1.6
74.52
37.4

Associated Gene:

Gene:
BRD1
Ensembl Gene ID:
ENSAPLG00000015650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016336
18676579 - 18730407
53829