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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18679234_18684766_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18679234 - 18684766
Intron Length:
5533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTGCT
5'SS Class:
major
3'SS Sequence:
TATTTGTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATATTTAATT
Flanking Amino Acid:
NYAKAARIAAEVGHSSMWIS
Intron Amino Acid Position:
1019

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
71.5
38.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.6
0.64
0.8
77.4
36.6
Minor 5ss
41
-1
3.2
56.2
43.3
Minor BPS
72.9
0.8
1.4
85.75
34.2

Associated Gene:

Gene:
BRD1
Ensembl Gene ID:
ENSAPLG00000015650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016336
18676579 - 18730407
53829