About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186972469_186976614_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
186972469 - 186976614
Intron Length:
4146

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCTAAAGGT
5'SS Class:
weak_major
3'SS Sequence:
AGGTTGATCTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATCTTTTCAAGC
Flanking Amino Acid:
FRDRRKRIPRFISYLQQQSR
Intron Amino Acid Position:
976

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.6
0.11
1.4
57.1
44.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
46.7
-0.1
1.7
51.4
46.4
Minor 5ss
17.1
-3.8
3.7
22.3
37.2
Minor BPS
49
-0
1.8
59.84
40

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000026214
186972385 - 187126548
154164