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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186973606_186976614_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
186973606 - 186976614
Intron Length:
3009

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCTAAAGGT
5'SS Class:
weak_major
3'SS Sequence:
GAATCATTCAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ACCTACTGAATC
Flanking Amino Acid:
FRDRRKRIPRCSNLYWADGI
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.6
0.11
1.4
57.1
44.2
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
47.6
-0.1
1.7
50.2
42.5
Minor 5ss
17.1
-3.8
3.7
22.3
37.2
Minor BPS
51.5
0.03
1.6
58.46
40.6

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047611
186973567 - 187046154
72588