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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186976172_186976607_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
186976172 - 186976607
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTATTTCTATT
Flanking Amino Acid:
DRRKRIPRAKDIPQNVSPTT
Intron Amino Acid Position:
985

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.8
89.3
23.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.6
0.8
0.8
80.2
31.8
Minor 5ss
35.6
-1.6
3
50.6
45.9
Minor BPS
48.4
-0
1.8
72
39.2

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000026714
186918035 - 187093749
175715
ENSAPLT00000014230
186918035 - 187129355
211321