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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186976704_186994011_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
186976704 - 186994011
Intron Length:
17308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TGGTAATCAAAG
Flanking Amino Acid:
KKKRLLEMKTEGEETGVMDS
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
78
0.63
0.8
71.8
32.9
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
42.7
-0.6
2
48.58
43.8

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014230
186918035 - 187129355
211321
ENSAPLT00000038885
186971961 - 187044974
73014
ENSAPLT00000026714
186918035 - 187093749
175715
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000047611
186973567 - 187046154
72588
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000041341
186918035 - 187129355
211321