Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186996713_187005878_R

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

186996713 - 187005878

Intron Length:

9166

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTATTCCTT

5'SS Class:

weak_minor

3'SS Sequence:

AGAAGATTTTCAG|A

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

AGTTCAT

U12 Branch Point Sequence:

TTCTAGTTCATG

Flanking Amino Acid:

FVAKMSISFGKLSRMHENME

Intron Amino Acid Position:

876

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.2

0.05

1.1

51.9

44.8

Major BPS

0.65

1.1

77.4

37.3

Major PPT

0.27

1.1

55.5

48.1

Minor 5ss

54.4

0.15

2.7

70.2

41.1

Minor BPS

43.3

-0.6

2.5

55.51

46.2

Associated Gene:

Gene:

DIAPH3

Ensembl Gene ID:

ENSAPLG00000013619

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041341

186918035 - 187129355

211321