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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187006016_187017386_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
187006016 - 187017386
Intron Length:
11371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTATA
5'SS Class:
major
3'SS Sequence:
TACTGTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTACTGTATTT
Flanking Amino Acid:
DFQHLDKASKVSAENLEKSL
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.2
79.4
35.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.3
0.53
0.9
70.6
39.6
Minor 5ss
34.6
-1.8
2.8
43.2
43.8
Minor BPS
46.6
-0.1
2.2
68.94
42.6

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000047611
186973567 - 187046154
72588
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000014230
186918035 - 187129355
211321
ENSAPLT00000038885
186971961 - 187044974
73014
ENSAPLT00000026714
186918035 - 187093749
175715