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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187017517_187022864_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187017517 - 187022864
Intron Length:
5348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGCATTTTAACT
Flanking Amino Acid:
FGYNLSSLCKLKDTKSADQK
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.9
0.67
0.8
73.8
36.8
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
63
0.49
1.3
71.19
39.9

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026714
186918035 - 187093749
175715
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000047611
186973567 - 187046154
72588
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000014230
186918035 - 187129355
211321
ENSAPLT00000038885
186971961 - 187044974
73014