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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187023105_187042906_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187023105 - 187042906
Intron Length:
19802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTCAATC
Flanking Amino Acid:
LSEPEQFGIVMSNVKRLRPR
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.2
0.63
0.9
78.8
33.4
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
61.4
0.34
1.5
69.41
36.9

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000047611
186973567 - 187046154
72588
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000014230
186918035 - 187129355
211321
ENSAPLT00000038885
186971961 - 187044974
73014
ENSAPLT00000026714
186918035 - 187093749
175715