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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18703005_18706128_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18703005 - 18706128
Intron Length:
3124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATAATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTATTTATAATT
Flanking Amino Acid:
AALEQDGEEEGDKSPPKLEP
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.6
0.69
0.9
77.7
40.6
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
57.3
0.31
1.6
72.75
38.8

Associated Gene:

Gene:
BRD1
Ensembl Gene ID:
ENSAPLG00000015650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016336
18676579 - 18730407
53829