About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187043009_187044959_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187043009 - 187044959
Intron Length:
1951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAAAATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTCTTTTGATA
Flanking Amino Acid:
SVVLHNLIKHLPEQE
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1
76
32.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
81.3
0.7
0.9
80.1
32
Minor 5ss
35.7
-1.6
3.3
53.5
43.7
Minor BPS
66.8
0.52
1.1
74.7
30

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038885
186971961 - 187044974
73014