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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187048704_187049674_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
187048704 - 187049674
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ATATTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
VLDPKIAQNLSIFLGSFRVP
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.4
0.71
0.9
78.7
38.8
Minor 5ss
37.1
-1.5
2.8
43.2
43.8
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000014230
186918035 - 187129355
211321
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000026714
186918035 - 187093749
175715