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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187049771_187092542_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
187049771 - 187092542
Intron Length:
42772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TTGTGTTTACTT
Flanking Amino Acid:
LELTFCCQQRVKKEEEDFEE
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
70.2
0.5
1
72.1
33
Major PPT
75.4
0.57
1
73.5
36.9
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
53.3
0.18
2
74.76
43.2

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000014230
186918035 - 187129355
211321