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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18708418_18709613_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18708418 - 18709613
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTACTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CATTACGTAATT
Flanking Amino Acid:
RKREKLKREQVKIEQVAMEL
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
77.1
0.61
0.8
74.7
35.5
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
52.2
0.15
2.2
73.87
43.2

Associated Gene:

Gene:
BRD1
Ensembl Gene ID:
ENSAPLG00000015650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016336
18676579 - 18730407
53829