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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187092658_187093536_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187092658 - 187093536
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
CTCTTGCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTGAATTAATT
Flanking Amino Acid:
VTMKRLNWSKIRPQEMTESC
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.1
0.63
0.8
72.9
32
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
55.7
0.26
1.9
76.67
39.8

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000014230
186918035 - 187129355
211321
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000026714
186918035 - 187093749
175715