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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187097202_187098113_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
187097202 - 187098113
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AAGAATTTACCT
Flanking Amino Acid:
LLLIRNDYFIRPQYFKIIEE
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77.1
34.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
75.4
0.57
0.8
72.9
32
Minor 5ss
51.3
0.05
2.4
67
44.2
Minor BPS
47.1
-0.1
1.8
61.2
42.3

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000014230
186918035 - 187129355
211321
ENSAPLT00000041341
186918035 - 187129355
211321