About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18709746_18716092_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18709746 - 18716092
Intron Length:
6347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ACTTCCTGAAAA
Flanking Amino Acid:
SLQSQRNTQQREDDEEMQAL
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
34.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.7
0.71
0.7
81.2
30
Minor 5ss
31.6
-2.1
3.4
42.4
45.1
Minor BPS
65.4
0.48
1.6
72.35
39.1

Associated Gene:

Gene:
BRD1
Ensembl Gene ID:
ENSAPLG00000015650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016336
18676579 - 18730407
53829