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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187099043_187111001_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187099043 - 187111001
Intron Length:
11959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATTGTTTTATTT
Flanking Amino Acid:
GLQDNSVQLQVACMQLINAL
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
80
0.67
0.8
75.5
33.1
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
55.4
0.25
1.6
72.97
39.1

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000014230
186918035 - 187129355
211321