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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187111711_187112056_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187111711 - 187112056
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAATATCT
Flanking Amino Acid:
QCLRAFMNNKYGLERILGEE
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
77.2
0.61
0.9
76.8
37.4
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
52.5
0.16
2.1
79.95
41.2

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000014230
186918035 - 187129355
211321
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000026214
186972385 - 187126548
154164