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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187112127_187112211_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
187112127 - 187112211
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGATG
5'SS Class:
major
3'SS Sequence:
TTAATTTATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTTTTAATT
Flanking Amino Acid:
DVLERLVETKHQDKIVKRSQ
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
67.5
43.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.5
0.66
1
78
40.2
Minor 5ss
38.1
-1.3
3.3
54.3
43.7
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000014230
186918035 - 187129355
211321
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000026214
186972385 - 187126548
154164