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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187116673_187123077_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187116673 - 187123077
Intron Length:
6405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
GTGTACCAAATA
Flanking Amino Acid:
MQYLSTASKSGSLKNRRKIS
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
62
0.3
1
62.3
30.4
Major PPT
86.9
0.83
0.7
84.6
30.4
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
44.9
-0.3
2.1
57.74
41.8

Associated Gene:

Gene:
DIAPH3
Ensembl Gene ID:
ENSAPLG00000013619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041341
186918035 - 187129355
211321
ENSAPLT00000026214
186972385 - 187126548
154164
ENSAPLT00000020625
186972385 - 187125110
152726
ENSAPLT00000014230
186918035 - 187129355
211321