About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187134584_187141685_R

Intron Information:

Intron Rank:
143610
Intron Class:
major
Intron Phase:
Intron Coordinates:
187134584 - 187141685
Intron Length:
7102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCATACTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCCCTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.8
0.6
0.9
70.3
34.6
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
60.2
0.4
2.1
86.25
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018814
187134038 - 187142372
8335