About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187149527_187151122_F

Intron Information:

Intron Rank:
133990
Intron Class:
major
Intron Phase:
Intron Coordinates:
187149527 - 187151122
Intron Length:
1596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACGG
5'SS Class:
major
3'SS Sequence:
TTGTGCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
59
45.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.2
0.57
0.9
73.6
37
Minor 5ss
37.4
-1.4
3
47.9
47.6
Minor BPS
69.8
0.62
1.7
79.94
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023754
187149021 - 187159953
10933