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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187158371_187159274_F

Intron Information:

Intron Rank:
133992
Intron Class:
major
Intron Phase:
Intron Coordinates:
187158371 - 187159274
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
ACAGATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
75.3
34.3
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
92.5
0.96
0.6
85.6
29.1
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
44.7
-0.3
1.7
55.41
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023754
187149021 - 187159953
10933