About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18716250_18729039_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18716250 - 18729039
Intron Length:
12790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATATTT
Flanking Amino Acid:
TVSAPYIPPQRLNKIMNQVA
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.3
0.59
0.8
74.2
34.9
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
66.8
0.6
1.9
89.01
35.8

Associated Gene:

Gene:
BRD1
Ensembl Gene ID:
ENSAPLG00000015650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016336
18676579 - 18730407
53829