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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187267242_187270326_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187267242 - 187270326
Intron Length:
3085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTCTGTTAATT
Flanking Amino Acid:
TNDIILVALNTDLRTIGKKF
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.1
24.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.9
0.63
0.9
74.6
39
Minor 5ss
44.3
-0.6
2.9
62.8
42
Minor BPS
57.1
0.3
2.1
76.4
40.9

Associated Gene:

Gene:
TDRD3
Ensembl Gene ID:
ENSAPLG00000014316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014967
187227520 - 187331267
103748