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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187270393_187281241_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187270393 - 187281241
Intron Length:
10849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACAAT
5'SS Class:
major
3'SS Sequence:
TTTGCATAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTGCATAAAT
Flanking Amino Acid:
SDINGGKVEKLEGPCVLQIQ
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
71.2
40.6
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
64
0.32
1
60.1
39.8
Minor 5ss
39
-1.2
3.3
56.4
48
Minor BPS
60
0.39
2.1
86.5
38.9

Associated Gene:

Gene:
TDRD3
Ensembl Gene ID:
ENSAPLG00000014316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014967
187227520 - 187331267
103748