Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187290691_187292904_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

187290691 - 187292904

Intron Length:

2214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGTGT

5'SS Class:

strong_major

3'SS Sequence:

TGTATCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TTTATGATAATT

Flanking Amino Acid:

GKNEGVYRELVDEKALKHIT

Intron Amino Acid Position:

287

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

72.2

39.9

Major BPS

84.6

0.86

41.2

Major PPT

82.3

0.73

0.9

73.5

41.7

Minor 5ss

38.6

-1.3

3.4

52.7

46.4

Minor BPS

48.9

-0

2.3

77.06

39.7

Associated Gene:

Gene:

TDRD3

Ensembl Gene ID:

ENSAPLG00000014316

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014967

187227520 - 187331267

103748