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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187293574_187305786_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
187293574 - 187305786
Intron Length:
12213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTCTTTATA
Flanking Amino Acid:
ESKMGTLTVEEPKLQFQPPH
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
91.9
0.94
0.6
88.3
21.5
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
72.4
0.7
1.5
82.54
31.8

Associated Gene:

Gene:
TDRD3
Ensembl Gene ID:
ENSAPLG00000014316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014967
187227520 - 187331267
103748