About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187308598_187326448_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187308598 - 187326448
Intron Length:
17851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
TGTTTGCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCTATTTAAAA
Flanking Amino Acid:
NIRPVHADTWEDEEETYEQT
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74
36.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80.4
0.68
0.9
74
36.8
Minor 5ss
40
-1.1
3.2
48.8
47.3
Minor BPS
63.9
0.43
1.6
73.42
38.3

Associated Gene:

Gene:
TDRD3
Ensembl Gene ID:
ENSAPLG00000014316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014967
187227520 - 187331267
103748