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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187326586_187331009_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
187326586 - 187331009
Intron Length:
4424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTCTTTCCCC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
86.3
0.82
0.7
84.1
23.8
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
46.5
-0.2
3.6
77.59
39

Associated Gene:

Gene:
TDRD3
Ensembl Gene ID:
ENSAPLG00000014316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014967
187227520 - 187331267
103748