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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187350891_187353155_F

Intron Information:

Intron Rank:
147476
Intron Class:
major
Intron Phase:
Intron Coordinates:
187350891 - 187353155
Intron Length:
2265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TTTTTCCCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
64.7
0.37
1
73
31.5
Major PPT
80
0.67
0.8
79
28.7
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
48.6
-0
2.1
76.5
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029417
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030692
187350684 - 187367477
16794