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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187365917_187366755_F

Intron Information:

Intron Rank:
147478
Intron Class:
major
Intron Phase:
Intron Coordinates:
187365917 - 187366755
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TAAATATTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
90.1
0.9
0.8
92.3
26.6
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
48.6
-0
1.9
67.91
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029417
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042666
187365816 - 187374061
8246