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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187404789_187419341_F

Intron Information:

Intron Rank:
145273
Intron Class:
major
Intron Phase:
Intron Coordinates:
187404789 - 187419341
Intron Length:
14553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATCGTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
81.5
0.71
0.8
78.6
34.6
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
63.8
0.51
2.1
82.35
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023344
187404625 - 187423219
18595