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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187577975_187578270_R

Intron Information:

Intron Rank:
132843
Intron Class:
major
Intron Phase:
Intron Coordinates:
187577975 - 187578270
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TAAAATTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
40.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
77.2
0.61
0.9
73.7
40.6
Minor 5ss
38.9
-1.2
2.9
49.7
46.6
Minor BPS
48.2
-0
1.9
67.93
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018687
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039278
187577923 - 187598823
20901