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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187611493_187617987_R

Intron Information:

Intron Rank:
151951
Intron Class:
major
Intron Phase:
Intron Coordinates:
187611493 - 187617987
Intron Length:
6495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTGTA
5'SS Class:
major
3'SS Sequence:
TTTACCCAGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATATATTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.2
32.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
62.6
0.28
1
59
37.3
Minor 5ss
44.8
-0.6
3.2
61.7
43.4
Minor BPS
54.6
0.12
1.8
66.53
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026650
187611277 - 187636481
25205