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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187624637_187625514_F

Intron Information:

Intron Rank:
134564
Intron Class:
major
Intron Phase:
Intron Coordinates:
187624637 - 187625514
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTAA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.2
33.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
81.2
0.7
0.9
73.5
41.9
Minor 5ss
38.5
-1.3
3
49.6
46.6
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022333
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039023
187624427 - 187625820
1394