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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187625694_187625793_F

Intron Information:

Intron Rank:
134565
Intron Class:
major
Intron Phase:
Intron Coordinates:
187625694 - 187625793
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTGTCT
5'SS Class:
major
3'SS Sequence:
CTATTCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.1
62.2
38.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.8
0.6
1
76.9
37
Minor 5ss
32.9
-1.9
3.5
48.2
47.4
Minor BPS
49.8
-0
2.1
72.45
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022333
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039023
187624427 - 187625820
1394