About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187650050_187658060_F

Intron Information:

Intron Rank:
132241
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
187650050 - 187658060
Intron Length:
8011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTACAG
5'SS Class:
weak_major
3'SS Sequence:
CCCTCTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
AATTCTTTGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.2
0.15
1.3
47.4
42.7
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
70.9
0.47
0.8
69.2
29.8
Minor 5ss
26.3
-2.7
3
30.6
42.7
Minor BPS
68
0.65
1.3
79.39
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047971
187649912 - 187658652
8741
ENSAPLT00000019187
187649912 - 187658652
8741