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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187698457_187699544_F

Intron Information:

Intron Rank:
130759
Intron Class:
major
Intron Phase:
Intron Coordinates:
187698457 - 187699544
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATATC
5'SS Class:
major
3'SS Sequence:
ATGCATCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.6
35.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
70.1
0.45
0.9
66.2
39.9
Minor 5ss
39.2
-1.2
2.9
46
42.5
Minor BPS
72
0.77
1.7
88.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020189
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017905
187692552 - 187730224
37673