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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187699675_187714559_F

Intron Information:

Intron Rank:
130760
Intron Class:
major
Intron Phase:
Intron Coordinates:
187699675 - 187714559
Intron Length:
14885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGAAC
5'SS Class:
major
3'SS Sequence:
GGTGCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
TGTACAAGGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71
34.3
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
70.3
0.46
1
65.4
45.5
Minor 5ss
27.2
-2.6
3
33.5
42
Minor BPS
41.9
-0.6
1.9
55.27
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020189
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017905
187692552 - 187730224
37673