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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_187714676_187730192_F

Intron Information:

Intron Rank:
130761
Intron Class:
major
Intron Phase:
Intron Coordinates:
187714676 - 187730192
Intron Length:
15517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTATACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAG
U12 Branch Point Sequence:
TTCTCCTATACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
53
0.07
1.7
70.7
42.6
Major PPT
72.1
0.5
0.8
66.6
33.9
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
63.5
0.5
2
84.03
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020189
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017905
187692552 - 187730224
37673