Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18783415_18783594_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18783415 - 18783594

Intron Length:

180

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTATGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CTTACAATAATT

Flanking Amino Acid:

KLHELVPSTAEVSVHIDVAA

Intron Amino Acid Position:

389

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

26.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

81.1

0.7

0.9

35.5

Minor 5ss

41.1

-1

2.5

50.4

46.1

Minor BPS

52.2

0.15

1.9

75.07

41.5

Associated Gene:

Gene:

ALG12

Ensembl Gene ID:

ENSAPLG00000015810

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037546

18779130 - 18789707

10578

ENSAPLT00000016493

18779130 - 18793101

13972