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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18783765_18784524_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18783765 - 18784524
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
CCCCTCTCAACA
Flanking Amino Acid:
NIVAAKVCSRILNNYRKSWL
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
69.8
0.45
0.9
64.8
29.3
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
50.5
0.01
1.6
56.1
43.3

Associated Gene:

Gene:
ALG12
Ensembl Gene ID:
ENSAPLG00000015810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016493
18779130 - 18793101
13972
ENSAPLT00000037546
18779130 - 18789707
10578