About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18784749_18785250_R

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
18784749 - 18785250
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTTCACCTTGAAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GCATCCTTAACT
Flanking Amino Acid:
TVLNKSSNWGTSPFLWYFYS
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
56
43.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.3
0.5
1
72.3
32.4
Minor 5ss
94.2
1.49
0.8
86.6
30.5
Minor BPS
82
1.08
1.1
85.91
39.8

Associated Gene:

Gene:
ALG12
Ensembl Gene ID:
ENSAPLG00000015810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016493
18779130 - 18793101
13972
ENSAPLT00000037546
18779130 - 18789707
10578