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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18786816_18788376_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18786816 - 18788376
Intron Length:
1561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
TLPNVFALPFVLLALTYWIQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
ALG12
Ensembl Gene ID:
ENSAPLG00000015810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016493
18779130 - 18793101
13972
ENSAPLT00000037546
18779130 - 18789707
10578