About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18789199_18789347_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18789199 - 18789347
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GCTATCTTACTT
Flanking Amino Acid:
VVYHQLDLDKYDHHEFPGVV
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
88.2
0.86
0.7
83.7
24.4
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
54.5
0.22
1.7
68.53
42.9

Associated Gene:

Gene:
ALG12
Ensembl Gene ID:
ENSAPLG00000015810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037546
18779130 - 18789707
10578
ENSAPLT00000016493
18779130 - 18793101
13972